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Bioinformatics Core Laboratory

Summary:

The mission of the bioinformatics core facility is three-fold: maintain equipment and software for bioinformatic research, promote bioinformatics education on the MSU campus, and provide training and support to biologists implementing bioinformatics tools in their research.

People:

Resources:

Instruments

Services

  • Database development ( Data maintenance service )

    Bioinformatics; Data Analysis; Data Production; Data Transformation. Inquire for pricing.

  • Expression data analysis ( Data analysis service )

    Bioinformatics; Data Analysis; Data Production; Data Transformation. Inquire for pricing.

  • Genome assembly ( Data analysis service )

    Bioinformatics; Data Analysis; Data Production; Data Transformation. Inquire for pricing.

  • Metagenomics analysis ( Data analysis service )

    Bioinformatics; Data Analysis; Data Production; Data Transformation. Inquire for pricing.

  • Microarray analysis ( Data analysis service )

    Bioinformatics; Data Analysis; Data Production; Data Transformation. Inquire for pricing.

  • Pathway data analysis ( Data analysis service )

    Bioinformatics; Data Analysis; Data Production; Data Transformation. Inquire for pricing.

  • Systems biology analysis ( Material analysis service )

    Bioinformatics; Data Analysis; Data Production; Data Transformation. Inquire for pricing

Software

  • Enrichment ( Software )

    enrichment (subset of the xstats package) is a Python library providing two methods to perform enrichment analysis, such as gene set enrichment analysis in bioinformatics.

  • Metaclassify ( Software )

  • MutationsHunter ( Software )

  • qprepare ( Software )

    See associated website for details.

  • SemanticDistance ( Software )

    SemanticDistance is a Python library for calculating distances between terms in an ontology; e.g., Gene Ontology or EC numbers.

  • tab2ARFF ( Software )


Web Links:

Last updated: 2014-10-02T15:23:02.799-05:00

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016